They are one of the first local authorities to offer the payment system, which will be available as an option for members of the Brighton & Hove Licensees Association in the autumn, when the majority of licences are due for renewal.
Many authorities do not send out annual reminders for the yearly premises licence fee and if a fee remains unpaid for 21 days the Licensing Authority will suspend the licence.
The scheme was set up in response to popular demand from members of the Association and so far 70 licensees have signed up.
Nick Griffin, spokesperson for the Brighton & Hove Licensees Association, praised the Council’s response to their proposal.
“It will save much distress for publicans and allow them to concentrate on what they do best - running great pubs in a great city,” he said.
“It’s key when such a simple vehicle as a direct debit scheme can ensure licensees, and consequently livelihoods, are not put at risk.
“I hope it can serve as a blueprint for other enlightened local authorities.”
Tim Nichols, head of regulatory services for Brighton & Hove City Council, added: “We are delighted to be able to take this innovative step and help to make the renewal process easier for licensees in the city.”
Islington Council has offered a similar scheme for licensees since 2012. Last year around 70 tenants in the London borough paid via direct debit.